Anime Goods Stores in Tokyo

This is just a listing of anime stores I know about in Tokyo by district / landmark.  It is a list that will likely be updated over time as I find new things or have to remove defunct stores.  I drew this list up for my own research so I hope it is of use to you.

Shinjuku

• Animate
• Yodobashi Camera
• Artnia Square Enix Cafe and a small shop (a bit of a walk on foot - take train)
• Toho Building (where the giant Godzilla head is) now has a Godzilla store on the main floor (as of Oct 30, 2017).

Shibuya

• Mandarake
• Animate
• Namco Character Shop  in Parco Part 1 (temporary closure for renovations in 2016?)
• One Piece Mugiwara Store in Parco Part 1 (temporary closure for renovations in 2016?)
• Production IG Store on the 7th floor of Shibuya Marui
• One Piece Mugiwara Store on the 7th floor of Shibuya Marui
• Loft
• Tokyu Hands

Ikebukuro

• Pokemon Mega Center at Sunshine City (this is big)
• J-World - Naruto, Dragon Ball, Shonen Jump Characters
• Animate Main Store - Flagship
• Evangelion Store in P'Parco Annex 2nd Floor (decent size, but not huge)
• Donguri Garden Stores for Studio Ghibli character goods at Sunshine City
• Sanrio Store for Hello Kitty, etc.

Tokyo Tower

• One Piece Theme Park

Tokyo Station

• Character Street - many anime stores including Pokemon Center, Jump Store, Gundam Cafe, and Ultraman.  The stores tend to be small, but there are many of them.
• Donguri Garden Store for Studio Ghibli character goods

 Odaiba

• Noitamina Goods Store in the Aqua City Mall
• Fuji TV Store in the Fuji TV Building
• Gundam Base Tokyo in Diver City (Gunpla kits) +  Giant Gundam out front.
• Some character goods stores for Sanrio and even Chicken Ramen on the main floor Diver City
• Toy R Us at Decks Mall
• Donguri Garden Stores for Studio Ghibli character goods at Venus Fort Mall 
• Cool retro shops and Showa theme park in Aqua City too.

Akihabara

• Anime goods everywhere - you're in Akihabara
• Gamers
• Animate
• Mandarake
• Yodobashi Flagship Store Camera
• Kotobukiya Store
• Akiba Culture Zone (Good Smile Cafe on top floor)
• New Radio Kaikan 
• Square Enix Cafe and small shop.
• Gundam Cafe and small shop.

Tokyo Skytree

• Pokemon Center
• NHK TV Character Store
• Jump Store
• Donguri Kyowakoku Store for Studio Ghibli character goods (giant Totoro in window display)
• Hello Kitty Store

Nakano Broadway

• Anime stores part of the mall has tons of stuff that is new and used.
• Very cool Mandarake collectors store (expensive collectibles)

Ghibli Museum 

• Museum shop has unique Ghibli items you won't find elsewhere.

Ueno

• Yamashiroya - cool toy store.

Omotesando / Harajuku

• Kiddyland - more of generally amazing toy store.  Almost everyone sees something they want.
• First permanent Sailor Moon store in Harajuku

Ginza

• Sanrio Store - pretty big one

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